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What does /sci/ think of MolView? Is there a better molecule

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Thread replies: 24
Thread images: 5

File: mv.png (65KB, 1366x665px) Image search: [Google]
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What does /sci/ think of MolView? Is there a better molecule editor/viewer I can use?
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File: BlueoneliskDeps_CCBY2.0.jpg (34KB, 600x257px) Image search: [Google]
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>>7701617
It's not part of blueobelisk....

But it's GNU PUBLIC LISCENSE, so it's allright! I'll have to check it out. Personally I use avogadro. Nanoengineer is pretty cool too, but I can't get the GUI to work on GNU\Linux.

What is that monstrosity?
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>>7701639
It was me attempted to build a polypeptide from scratch... Things didn't go well and it ended fusing with two other peptide chains by mistake(The bonds were too close to eachother.)
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>>7701617
ChemDraw maybe ?
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>>7701639
Just looked up the SMILES for it--
C(C(N([H])C(C(N([H])C(C(N([H])C(C(N([H])C(C(N([H])C(C(N([H])C(C(N([H])C(C(N([H])C(C(=O)[N+]([H])[H])C1C=CC(O[H])=CC=1)=O)CCCN([H])C(N([H])[H])N([H])[H])=O)CCC(C)O[H])=O)C)=O)CCC(O[H])C)=O)C1C=CC(O[H])=CC=1)=O)CCCN([H])C(N([H])[H])N([H])[H])=O)CCC(C)O[H])=O)(N([H])C(C(N([H])C(C(N([H])C(C(N([H])C(C(N([H])C(C(N([H])C(C(N([H])C(C(N([H])C([O-])=O)C1C=CC(O[H])=CC=1)=O)CCC(C)O[H])=O)C)=O)CCC(OC(C(C(N(C(C(N(C(C(N(C(C(N(C(C([N+]([H])[H])=O)OCC(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(C(N(C(=O)[O-])[H])C1=CC=C(O[H])C=C1)=O)[H])C)=O)[H])C(CC(C)=O)O[H])=O)[H])CC(O[H])N([H])[H])=O)[H])CO[H])=O)[H])C1=CC=C(O[H])C=C1)=O)[H])C)=O)[H])C(CC(C)=O)O[H])=O)[H])CC(N([H])[H])O[H])=O)[H])CO[H])=O)[H])C1=CC=C(O[H])C=C1)=O)[H])C)=O)[H])C(CC(=O)C)O[H])=O)[H])CC(N([H])[H])O[H])=O)[H])CO[H])=O)[H])C1=CC=C(O[H])C=C1)=O)[H])C)=O)[H])C(CC(C)=O)O[H])=O)[H])CC(O[H])N([H])[H])=O)[H])CO[H])=O)[H])C1=CC=C(O[H])C=C1)=O)[H])C)=O)[H])C(CC(C)=O)O[H])=O)[H])CC(N([H])[H])O[H])=O)[H])CO[H])=O)[H])C1=CC=C(O[H])C=C1)=O)[H])C)=O)[H])C(CC(C)=O)O[H])=O)[H])CC(O[H])N([H])[H])=O)[H])CO[H])=O)[H])C1=CC=C(O[H])C=C1)=O)[H])C)=O)[H])C(CC(C)=O)O[H])=O)[H])CC(O[H])N([H])[H])=O)[H])C(=O)N(C(C1=CC=C(O[H])C=C1)C(=O)N(C(C)C(=O)N(C(C(CC(C)=O)O[H])C(=O)[N+]([H])[H])[H])[H])[H])[H])=O)CCC(O[H])C)[H])=O)CO[H])[H])=O)C(O[H])C)[H])=O)N([H])C(C(N([H])C([O-])=O)C)=O)C)C)=O)CCCN([H])C(N([H])[H])N([H])[H])=O)C1C=CC(O[H])=CC=1)=O)CCC(O[H])C)=O)C
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>>7701644
Why would you do that? Why not just type in the amino acid sequence and call it a day?
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>>7701666
nice get. Now make something with more than 100 nested ring closures. Most SMILES parsers can't handle this much.
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>>7701669
I was bored, and as far as I know, the only way to actually get/build molecules in Molview is to physically put the bonds in place. Sometimes it gets a little fucky and ends up messing with everything.
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Chemdraw is cool
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File: JUST.png (72KB, 683x626px) Image search: [Google]
JUST.png
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Heh, shit's fucked up senpai.
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Huh, it's got Jmol, GLmol, and Chemdoodle.
Thanks for posting this OP, will use in future.
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>>7702568
Is that an amino acid polymer in your pocket or are you just happy to see me?
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>>7702596
peptide.. it's a peptide.
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>>7701617
I like PyMol
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>>7702629
>>7702596
>amino acid polymer
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>>7701639

Curious about that diagram - what do the ellipses, diamonds and rectangles represent?

Some are apps, some are software libraries, but beyond that I can't tell specifically how to read this chart...
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>>7701617

I used VMD, and NAMD. Free software from UIUC.

Though, I've never used MolView, and VMD took me some time to learn how to use properly.
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>>7705487
4u
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VMD is what I use also.

Render it with built in Tachyon renderer and you have publication quality material
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Am I peasant if I only know Gaussview?
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>>7701816
I think it's the best possibility, Avogadro is good enough (though I don't remember if it can give names to structures).
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HOW'S my benzene ring bros???//
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File: Screenshot_2015-12-07-09-17-45.png (157KB, 1440x2560px) Image search: [Google]
Screenshot_2015-12-07-09-17-45.png
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HOW'S my benzene ring bros???//>>7705587
FORGOT PIC
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>>7705487
It's all the projects of the Blue Obelisk: https://en.m.wikipedia.org/wiki/Blue_Obelisk

They fight for your freedom
Thread posts: 24
Thread images: 5


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